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QIIME2 Typical Workflow
General introduction to Qiime2
Prerequisites
Hypothesis
2. Data set up
Set up working Environment and data
3. Importing data into QIIME 2
Import your raw data
4. Sequence QC and feature table
Import your raw data
5. Generating a phylogenetic tree for diversity analysis
6. Alpha Rarefaction and Selecting a Rarefaction Depth
7. Diversity analysis
8. Taxonomic classification
9. Taxonomy barchart
10. Differential abundance with ANCOM
11. Taxonomic classification again
12. Longitudinal analysis
13. Machine-learning classifiers for predicting sample characteristics
14. Synthesis
References.
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